RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g62580.6 View Network Show in Genome Browser |
| Other Names | Os03g0842700 |
| Description | vacuolar sorting protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 35424469-35428088 Nucleotide Length: 657 |
| Protein-coding | LOC_Os03g62580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g46390 LOC_Os02g06640 LOC_Os03g13170 LOC_Os01g22490 LOC_Os03g18210 LOC_Os03g02200 LOC_Os03g17700 LOC_Os02g20310 |
| Downstream Genes | LOC_Os05g19270 LOC_Os04g56740 LOC_Os06g20390 LOC_Os12g43550 LOC_Os12g41670 LOC_Os06g46770 LOC_Os05g42424 LOC_Os09g39500 LOC_Os05g06770 LOC_Os08g33340 LOC_Os04g53620 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g62580.6 |
| Rice Genome Annotation | LOC_Os03g62580.6 |
| Ricechip | LOC_Os03g62580.6 |
| KEGG | osa:4334742 dosa:Os03t0842700-03 |
| Entrez-Gene | 4334742 |