RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g62780.1 View Network Show in Genome Browser |
| Other Names | Os03g0844900 |
| Description | S1 RNA binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 35520540-35523897 Nucleotide Length: 1140 |
| Protein-coding | LOC_Os03g62780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g50810 LOC_Os03g06200 LOC_Os03g14040 LOC_Os02g19860 LOC_Os03g18510 LOC_Os02g51570 LOC_Os01g05080 LOC_Os01g04900 LOC_Os01g37590 LOC_Os03g36750 LOC_Os03g03020 More.. |
| Downstream Genes | LOC_Os06g04280 LOC_Os04g43922 LOC_Os05g41510 LOC_Os05g33240 LOC_Os07g07310 LOC_Os09g26810 LOC_Os09g36520 LOC_Os09g34140 LOC_Os05g22730 LOC_Os11g27329 LOC_Os11g27264 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444a-3p.1 osa-miR444d.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g62780.1 |
| Rice Genome Annotation | LOC_Os03g62780.1 |
| Ricechip | LOC_Os03g62780.1 |
| KEGG | osa:4334761 dosa:Os03t0844900-01 |
| Entrez-Gene | 4334761 |