RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g63750.1 View Network Show in Genome Browser |
| Other Names | Os03g0854500 |
| Description | HSF-type DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 35989011-35992635 Nucleotide Length: 1521 |
| Protein-coding | LOC_Os03g63750 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g34840 LOC_Os03g16920 LOC_Os01g69920 LOC_Os03g45410 LOC_Os01g73890 LOC_Os01g46020 LOC_Os01g62290 LOC_Os02g32120 LOC_Os01g13760 LOC_Os03g60620 LOC_Os01g54550 More.. |
| Downstream Genes | LOC_Os05g01710 LOC_Os05g28010 LOC_Os03g63920 LOC_Os12g39070 LOC_Os07g22950 LOC_Os05g38530 LOC_Os04g32660 LOC_Os05g48810 LOC_Os11g47760 LOC_Os10g28340 LOC_Os10g29660 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444b.2 osa-miR444c.2 |
| Reference | |
|---|---|
| PubMed | 21792744 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g63750.1 |
| Rice Genome Annotation | LOC_Os03g63750.1 |
| Ricechip | LOC_Os03g63750.1 |
| KEGG | osa:4334826 dosa:Os03t0854500-01 |
| Entrez-Gene | 4334826 |