RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g63950.1 View Network Show in Genome Browser |
| Other Names | Os03g0856500 |
| Description | plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 36132038-36134636 Nucleotide Length: 930 |
| Protein-coding | LOC_Os03g63950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g21820 LOC_Os03g14040 LOC_Os01g28540 LOC_Os03g19300 LOC_Os01g39830 LOC_Os01g68480 LOC_Os01g05080 LOC_Os02g41550 LOC_Os03g50810 LOC_Os03g20340 LOC_Os02g44630 More.. |
| Downstream Genes | LOC_Os11g08980 LOC_Os12g07020 LOC_Os08g40160 LOC_Os05g01950 LOC_Os08g39430 LOC_Os05g31160 LOC_Os07g36250 LOC_Os09g34140 LOC_Os06g40640 LOC_Os06g08670 LOC_Os06g19480 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR530-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g63950.1 |
| Rice Genome Annotation | LOC_Os03g63950.1 |
| Ricechip | LOC_Os03g63950.1 |
| KEGG | osa:4334840 dosa:Os03t0856500-01 |
| Entrez-Gene | 4334840 |