RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g01480.1 View Network Show in Genome Browser |
| Other Names | Os04g0105000 |
| Description | zinc finger C-x8-C-x5-C-x3-H type family protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 321281-329266 Nucleotide Length: 2553 |
| Protein-coding | LOC_Os04g01480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g49500 LOC_Os01g69920 LOC_Os02g57530 LOC_Os03g50860 LOC_Os01g34200 LOC_Os02g50480 |
| Downstream Genes | LOC_Os12g41830 LOC_Os05g28280 LOC_Os05g06320 LOC_Os07g47500 LOC_Os07g20150 LOC_Os06g03920 LOC_Os06g08450 LOC_Os11g34210 LOC_Os04g55050 LOC_Os10g21810 LOC_Os09g39980 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g01480.1 |
| Rice Genome Annotation | LOC_Os04g01480.1 |
| Ricechip | LOC_Os04g01480.1 |
| KEGG | osa:9271204 dosa:Os04t0105000-01 |
| Entrez-Gene | 9271204 |