RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g01970.1 View Network Show in Genome Browser |
| Other Names | Os04g0110300 |
| Description | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 602300-608879 Nucleotide Length: 2661 |
| Protein-coding | LOC_Os04g01970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58530 LOC_Os02g10060 LOC_Os01g47600 LOC_Os01g16890 LOC_Os02g01332 LOC_Os03g08440 LOC_Os03g45410 LOC_Os02g52460 LOC_Os03g02780 LOC_Os02g45940 LOC_Os02g35100 More.. |
| Downstream Genes | LOC_Os09g21770 LOC_Os08g32620 LOC_Os07g08880 LOC_Os05g05230 LOC_Os12g39070 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 LOC_Os09g31180 LOC_Os05g05780 LOC_Os04g36890 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g01970.1 |
| Rice Genome Annotation | LOC_Os04g01970.1 |
| Ricechip | LOC_Os04g01970.1 |
| KEGG | osa:4334928 dosa:Os04t0110300-02 |
| Entrez-Gene | 4334928 |