RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g02050.1 View Network Show in Genome Browser |
| Other Names | Os04g0111225,Os04g0111200 |
| Description | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 646157-649682 Nucleotide Length: 1068 |
| Protein-coding | LOC_Os04g02050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g44050 LOC_Os01g27160 LOC_Os02g47870 LOC_Os01g62840 LOC_Os03g10500 LOC_Os03g16150 LOC_Os01g27150 LOC_Os01g14950 LOC_Os01g24060 LOC_Os03g12710 LOC_Os02g04240 More.. |
| Downstream Genes | LOC_Os07g32570 LOC_Os07g38560 LOC_Os11g26910 LOC_Os08g13930 LOC_Os05g06350 LOC_Os05g05700 LOC_Os11g41650 LOC_Os12g17160 LOC_Os10g11270 LOC_Os09g36830 LOC_Os12g10560 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn00920 rn01100 rn01120 rn00450 |
| Metacyc Pathways | SO4ASSIM-PWY PWY-5278 SULFMETII-PWY PWY-5340 PWY-6683 DISSULFRED-PWY P224-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g02050.1 |
| Rice Genome Annotation | LOC_Os04g02050.1 |
| Ricechip | LOC_Os04g02050.1 |
| KEGG | osa:4334932 dosa:Os04t0111225-00dosa:Os04t0111200-01 |