RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g02720.1 View Network Show in Genome Browser |
| Other Names | Os04g0117500 |
| Description | potassium channel KAT2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 1042687-1044943 Nucleotide Length: 1107 |
| Protein-coding | LOC_Os04g02720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59360 LOC_Os03g12860 LOC_Os01g43410 LOC_Os01g61590 LOC_Os03g59390 LOC_Os03g48270 LOC_Os02g03410 LOC_Os03g25070 LOC_Os03g43890 LOC_Os01g48680 LOC_Os02g55970 More.. |
| Downstream Genes | LOC_Os05g41270 LOC_Os11g04170 LOC_Os12g03970 LOC_Os06g04870 LOC_Os05g50810 LOC_Os07g33110 LOC_Os04g47300 LOC_Os05g39090 LOC_Os07g38120 LOC_Os12g12860 LOC_Os09g33910 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2874 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g02720.1 |
| Rice Genome Annotation | LOC_Os04g02720.1 |
| Ricechip | LOC_Os04g02720.1 |
| KEGG | dosa:Os04t0117500-00 |