RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g02754.1 View Network Show in Genome Browser |
| Other Names | Os04g0117900 |
| Description | amidase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 1054609-1070954 Nucleotide Length: 1305 |
| Protein-coding | LOC_Os04g02754 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44820 LOC_Os02g53400 LOC_Os01g65380 LOC_Os03g55670 LOC_Os02g10190 LOC_Os03g32790 LOC_Os03g51030 LOC_Os01g65460 |
| Downstream Genes | LOC_Os04g02780 LOC_Os04g10530 LOC_Os04g10460 LOC_Os07g43390 LOC_Os11g34210 LOC_Os11g44810 LOC_Os08g32930 LOC_Os05g37830 LOC_Os06g40640 LOC_Os07g44180 LOC_Os06g24540 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 rn01100 |
| Metacyc Pathways | P345-PWY P344-PWY ARGDEG-V-PWY PWY-3161 PWY-5025 PWY6666-1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g02754.1 |
| Rice Genome Annotation | LOC_Os04g02754.1 |
| Ricechip | LOC_Os04g02754.1 |
| KEGG | dosa:Os04t0117900-01 |