RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g02870.3 View Network Show in Genome Browser |
| Other Names | Os04g0118900 |
| Description | RNA recognition motif containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 1120609-1125000 Nucleotide Length: 708 |
| Protein-coding | LOC_Os04g02870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g17950 LOC_Os03g22690 LOC_Os03g22450 |
| Downstream Genes | LOC_Os04g51900 LOC_Os07g44620 LOC_Os08g23110 LOC_Os09g32976 LOC_Os08g23710 LOC_Os04g52960 LOC_Os05g44320 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g02870.3 |
| Rice Genome Annotation | LOC_Os04g02870.3 |
| Ricechip | LOC_Os04g02870.3 |
| KEGG | osa:4334964 dosa:Os04t0118900-01 |
| Entrez-Gene | 4334964 |