RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g02900.1 View Network Show in Genome Browser |
| Other Names | Os04g0119400 |
| Description | dehydrogenase E1 component domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 1135879-1139939 Nucleotide Length: 1278 |
| Protein-coding | LOC_Os04g02900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44300 LOC_Os02g01500 LOC_Os01g10020 LOC_Os01g56310 LOC_Os01g56560 LOC_Os03g15950 |
| Downstream Genes | LOC_Os12g42230 LOC_Os09g33500 LOC_Os08g42410 LOC_Os09g24320 LOC_Os08g33440 LOC_Os12g08170 LOC_Os06g01630 LOC_Os07g22720 LOC_Os06g30460 LOC_Os07g07470 LOC_Os04g38330 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00020 rn00620 rn00650 rn01110 rn01120 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g02900.1 |
| Rice Genome Annotation | LOC_Os04g02900.1 |
| Ricechip | LOC_Os04g02900.1 |
| KEGG | osa:4334968 dosa:Os04t0119400-01 |
| Entrez-Gene | 4334968 |