RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g04020.1 View Network Show in Genome Browser |
| Other Names | Os04g0129500 |
| Description | protein transport protein Sec24-like, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 1857915-1865238 Nucleotide Length: 3096 |
| Protein-coding | LOC_Os04g04020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53140 LOC_Os01g23620 LOC_Os02g04320 LOC_Os01g53450 LOC_Os01g73310 LOC_Os03g61970 LOC_Os03g61630 LOC_Os03g24220 LOC_Os03g45170 LOC_Os01g64630 LOC_Os02g48670 More.. |
| Downstream Genes | LOC_Os11g24560 LOC_Os12g37360 LOC_Os07g46370 LOC_Os10g41150 LOC_Os06g12090 LOC_Os04g56160 LOC_Os06g44890 LOC_Os08g36994 LOC_Os05g01600 LOC_Os09g28610 LOC_Os11g06390 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g04020.1 |
| Rice Genome Annotation | LOC_Os04g04020.1 |
| Ricechip | LOC_Os04g04020.1 |
| KEGG | osa:4334998 dosa:Os04t0129500-01 |
| Entrez-Gene | 4334998 |