RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g04980.1 View Network Show in Genome Browser |
| Other Names | Os04g0136500 |
| Description | pyridoxal-dependent decarboxylase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 2413801-2415039 Nucleotide Length: 906 |
| Protein-coding | LOC_Os04g04980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| IEA | ||||
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39790 LOC_Os02g15550 LOC_Os03g63490 LOC_Os01g12570 LOC_Os01g12560 LOC_Os03g50880 |
| Downstream Genes | LOC_Os07g22600 LOC_Os04g42090 LOC_Os09g25620 LOC_Os05g01310 LOC_Os06g33710 LOC_Os05g05230 LOC_Os10g28040 LOC_Os10g38850 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn00480 rn01100 rn01110 |
| Metacyc Pathways | PWY-46 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g04980.1 |
| Rice Genome Annotation | LOC_Os04g04980.1 |
| Ricechip | LOC_Os04g04980.1 |
| KEGG | osa:4335010 |
| Entrez-Gene | 4335010 |