RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g05050.1 View Network Show in Genome Browser |
| Other Names | Os04g0137001,Os04g0137100,Os04g0137201 |
| Description | pectate lyase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 2480533-2485914 Nucleotide Length: 1422 |
| Protein-coding | LOC_Os04g05050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g64320 LOC_Os01g47780 LOC_Os01g18240 LOC_Os03g02240 LOC_Os01g62490 |
| Downstream Genes | LOC_Os08g37300 LOC_Os07g40890 LOC_Os05g04820 LOC_Os11g26190 LOC_Os09g32510 LOC_Os08g41320 LOC_Os11g10460 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g05050.1 |
| Rice Genome Annotation | LOC_Os04g05050.1 |
| Ricechip | LOC_Os04g05050.1 |
| KEGG | osa:4335013 dosa:Os04t0137100-00 |