RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g08034.5 View Network Show in Genome Browser |
| Other Names | Os04g0162100 |
| Description | ZOS4-02 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 4274885-4290697 Nucleotide Length: 1260 |
| Protein-coding | LOC_Os04g08034 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19480 LOC_Os03g58970 LOC_Os02g52140 LOC_Os02g51880 LOC_Os03g43890 LOC_Os01g27940 LOC_Os02g05640 |
| Downstream Genes | LOC_Os08g04270 LOC_Os06g16390 LOC_Os08g04290 LOC_Os09g11970 LOC_Os07g10110 LOC_Os06g11620 LOC_Os09g11990 LOC_Os07g38060 LOC_Os04g47270 LOC_Os09g35760 LOC_Os08g04780 More.. |
| Reference | |
|---|---|
| PubMed | 19825651 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g08034.5 |
| Rice Genome Annotation | LOC_Os04g08034.5 |
| Ricechip | LOC_Os04g08034.5 |
| KEGG | osa:4335036 dosa:Os04t0162100-01 |
| Entrez-Gene | 4335036 |