RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g08350.3 View Network Show in Genome Browser |
| Other Names | Os04g0165700 |
| Description | cysteine synthase, chloroplast/chromoplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 4458301-4461845 Nucleotide Length: 936 |
| Protein-coding | LOC_Os04g08350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g50510 LOC_Os03g63940 LOC_Os02g51410 LOC_Os03g51600 LOC_Os04g02820 LOC_Os01g46980 LOC_Os02g32030 LOC_Os03g11660 LOC_Os03g10190 LOC_Os02g05330 LOC_Os01g37837 More.. |
| Downstream Genes | LOC_Os06g07960 LOC_Os06g07860 LOC_Os11g26850 LOC_Os04g46930 LOC_Os04g32880 LOC_Os04g54800 LOC_Os06g12150 LOC_Os11g14220 LOC_Os06g48750 LOC_Os08g04180 LOC_Os07g38730 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g08350.3 |
| Rice Genome Annotation | LOC_Os04g08350.3 |
| Ricechip | LOC_Os04g08350.3 |
| KEGG | osa:4335048 dosa:Os04t0165700-01 |
| Entrez-Gene | 4335048 |