RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g09810.1 View Network Show in Genome Browser |
| Other Names | Os04g0177400 |
| Description | riboflavin biosynthesis protein ribD, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 5263669-5266752 Nucleotide Length: 1215 |
| Protein-coding | LOC_Os04g09810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g36340 LOC_Os03g45400 LOC_Os03g52840 LOC_Os01g65410 LOC_Os01g14630 LOC_Os02g44780 |
| Downstream Genes | LOC_Os12g35580 LOC_Os04g42000 LOC_Os05g38570 LOC_Os11g26860 LOC_Os05g35440 LOC_Os12g22030 LOC_Os07g39270 LOC_Os05g14580 LOC_Os10g35870 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1846a-5p osa-miR1846b-5p osa-miR1846c-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00740 rn01100 |
| Metacyc Pathways | RIBOSYN2-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g09810.1 |
| Rice Genome Annotation | LOC_Os04g09810.1 |
| Ricechip | LOC_Os04g09810.1 |
| KEGG | osa:9272088 dosa:Os04t0177400-01 |
| Entrez-Gene | 9272088 |