RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g09900.1 View Network Show in Genome Browser |
| Other Names | Os04g0178300 |
| Description | ent-kaurene synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 5318060-5326427 Nucleotide Length: 2304 |
| Protein-coding | LOC_Os04g09900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os12g36830 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00904 rn01110 |
| Metacyc Pathways | PWY4KF-48 PWY-2981 |
| Reference | |
|---|---|
| PubMed | 15341631 19270400 22150231 19635799 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g09900.1 |
| Rice Genome Annotation | LOC_Os04g09900.1 |
| Ricechip | LOC_Os04g09900.1 |
| KEGG | osa:4335090 dosa:Os04t0178300-01 |
| Entrez-Gene | 4335090 |