RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g09920.1 View Network Show in Genome Browser |
| Other Names | Os04g0178400 |
| Description | cytochrome P450, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 5332329-5334479 Nucleotide Length: 1509 |
| Protein-coding | LOC_Os04g09920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0019825 | oxygen binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g60960 LOC_Os01g59110 LOC_Os01g53420 LOC_Os01g53380 LOC_Os01g53350 LOC_Os01g53370 LOC_Os01g53390 LOC_Os01g50200 LOC_Os02g42280 LOC_Os02g36140 LOC_Os03g55030 More.. |
| Downstream Genes | LOC_Os07g23410 LOC_Os10g18530 LOC_Os09g34230 LOC_Os08g38160 LOC_Os07g13800 LOC_Os06g18790 LOC_Os05g42060 LOC_Os04g44354 LOC_Os10g18480 LOC_Os10g18510 LOC_Os06g18670 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00627 rn01120 rn00363 rn00624 rn00945 rn01110 rn00903 rn00600 rn01100 rn00905 |
| Reference | |
|---|---|
| PubMed | 21175892 19635799 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g09920.1 |
| Rice Genome Annotation | LOC_Os04g09920.1 |
| Ricechip | LOC_Os04g09920.1 |
| KEGG | osa:4335091 dosa:Os04t0178400-01 |
| Entrez-Gene | 4335091 |