RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g10000.1 View Network Show in Genome Browser
Other Names	Os04g0179100
Description	sex determination protein tasselseed-2, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 5380095-5381565 Nucleotide Length: 825
Protein-coding	LOC_Os04g10000

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g62900 LOC_Os03g17000 LOC_Os02g57180 LOC_Os03g29170 LOC_Os02g45540 LOC_Os01g05840 LOC_Os03g60740 LOC_Os03g29150 LOC_Os03g23980 LOC_Os02g04510 LOC_Os03g02460 More..
Downstream Genes	LOC_Os05g38150 LOC_Os12g43740 LOC_Os04g38420 LOC_Os06g04620 LOC_Os06g44270 LOC_Os06g25439 LOC_Os06g44260 LOC_Os05g51670 LOC_Os08g28730 LOC_Os09g15420 LOC_Os05g32190 More..

Pathways
KEGG Pathways	rn00010 rn01100 rn01110 rn01120
Metacyc Pathways	PWY-5079 PWY-5078 PWY-5076 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5082 ENTBACSYN-PWY

Reference
PubMed	19635799

Database Links
Gramene	LOC_Os04g10000.1
Rice Genome Annotation	LOC_Os04g10000.1
Ricechip	LOC_Os04g10000.1
KEGG	osa:4335092 dosa:Os04t0179100-01
Entrez-Gene	4335092