RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g10010.1 View Network Show in Genome Browser |
| Other Names | Os04g0179200 |
| Description | sex determination protein tasselseed-2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 5385722-5387215 Nucleotide Length: 825 |
| Protein-coding | LOC_Os04g10010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g62900 LOC_Os03g17000 LOC_Os02g57180 LOC_Os03g29170 LOC_Os02g45540 LOC_Os01g05840 LOC_Os03g60740 LOC_Os03g29150 LOC_Os03g23980 LOC_Os02g04510 LOC_Os03g02460 More.. |
| Downstream Genes | LOC_Os05g38150 LOC_Os12g43740 LOC_Os04g38420 LOC_Os06g04620 LOC_Os06g44270 LOC_Os06g25439 LOC_Os06g44260 LOC_Os05g51670 LOC_Os08g28730 LOC_Os09g15420 LOC_Os05g32190 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 rn00904 |
| Metacyc Pathways | PWY-5078 PWY-5082 PWY-5079 PWY-5057 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5076 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g10010.1 |
| Rice Genome Annotation | LOC_Os04g10010.1 |
| Ricechip | LOC_Os04g10010.1 |
| KEGG | osa:4335093 dosa:Os04t0179200-01 |
| Entrez-Gene | 4335093 |