RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g11880.1 View Network Show in Genome Browser |
| Other Names | Os04g0195000 |
| Description | WD domain, G-beta repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 6511575-6519015 Nucleotide Length: 2850 |
| Protein-coding | LOC_Os04g11880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47650 LOC_Os01g32880 LOC_Os02g06490 LOC_Os01g04840 LOC_Os01g64650 LOC_Os02g02720 LOC_Os01g51120 LOC_Os01g37980 LOC_Os03g59040 LOC_Os02g24134 LOC_Os03g28140 More.. |
| Downstream Genes | LOC_Os04g31390 LOC_Os08g08060 LOC_Os04g14654 LOC_Os12g01390 LOC_Os11g01380 LOC_Os08g17600 LOC_Os06g51250 LOC_Os11g10420 LOC_Os12g43550 LOC_Os07g10600 LOC_Os08g42540 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g11880.1 |
| Rice Genome Annotation | LOC_Os04g11880.1 |
| Ricechip | LOC_Os04g11880.1 |
| KEGG | osa:4335134 dosa:Os04t0195000-01 |
| Entrez-Gene | 4335134 |