RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g14680.1 View Network Show in Genome Browser
Other Names	Os04g0223300
Description	OsAPx3 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 8239237-8241868 Nucleotide Length: 876
Protein-coding	LOC_Os04g14680

Gene Ontology Classification
GO	Name	Type	Code
GO:0008152	metabolic process	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005739	mitochondrion	Cellular Component	IEA
GO:0005777	peroxisome	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA
GO:0005773	vacuole	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g58630 LOC_Os01g48420 LOC_Os02g33450 LOC_Os01g55740 LOC_Os02g44500 LOC_Os01g70960 LOC_Os02g56110 LOC_Os02g28810 LOC_Os01g66180 LOC_Os01g67040 LOC_Os01g53450 More..
Downstream Genes	LOC_Os07g08840 LOC_Os07g44430 LOC_Os05g34770 LOC_Os08g44770 LOC_Os11g42160 LOC_Os05g23620 LOC_Os07g44440 LOC_Os07g09310 LOC_Os06g07090 LOC_Os11g18170 LOC_Os04g52130 More..

Pathways
KEGG Pathways	rn00053 rn00480
Metacyc Pathways	DETOX1-PWY PWY66-162 PWY-5461 PWY-2261

Reference
PubMed	17916638 22196946

Database Links
Gramene	LOC_Os04g14680.1
Rice Genome Annotation	LOC_Os04g14680.1
Ricechip	LOC_Os04g14680.1
KEGG	osa:4335202 dosa:Os04t0223300-00
Entrez-Gene	4335202