RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g18010.1 View Network Show in Genome Browser |
| Other Names | Os04g0252200 |
| Description | cleavage and polyadenylation specificity factor subunit 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 9888777-9915608 Nucleotide Length: 1530 |
| Protein-coding | LOC_Os04g18010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g63590 LOC_Os01g72220 LOC_Os03g16110 LOC_Os02g04480 LOC_Os02g12570 LOC_Os03g44484 LOC_Os02g05310 LOC_Os01g59140 LOC_Os03g13760 LOC_Os02g01250 LOC_Os03g54770 More.. |
| Downstream Genes | LOC_Os09g39590 LOC_Os06g21470 LOC_Os10g29560 LOC_Os05g46570 LOC_Os12g07050 LOC_Os11g16540 LOC_Os06g48310 LOC_Os12g38380 LOC_Os05g05860 LOC_Os06g36360 LOC_Os07g40030 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167a-5p osa-miR167b osa-miR167c-5p osa-miR167d-5p osa-miR167e-5p osa-miR167f osa-miR167g osa-miR167h-5p osa-miR167i-5p osa-miR167j |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g18010.1 |
| Rice Genome Annotation | LOC_Os04g18010.1 |
| Ricechip | LOC_Os04g18010.1 |
| KEGG | osa:9266269 dosa:Os04t0252200-01 |
| Entrez-Gene | 9266269 |