RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g20220.1 View Network Show in Genome Browser |
| Other Names | Os04g0270100 |
| Description | elongation factor Tu, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 11272494-11286378 Nucleotide Length: 1644 |
| Protein-coding | LOC_Os04g20220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g49580 LOC_Os01g71270 LOC_Os03g14530 LOC_Os01g04730 LOC_Os03g42220 LOC_Os02g32030 LOC_Os04g02820 LOC_Os03g25050 LOC_Os01g27630 LOC_Os03g05980 LOC_Os01g62040 More.. |
| Downstream Genes | LOC_Os07g39870 LOC_Os12g05430 LOC_Os10g08930 LOC_Os05g44340 LOC_Os06g04290 LOC_Os05g51500 LOC_Os05g31020 LOC_Os06g40600 LOC_Os07g08170 LOC_Os11g05370 LOC_Os11g38959 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g20220.1 |
| Rice Genome Annotation | LOC_Os04g20220.1 |
| Ricechip | LOC_Os04g20220.1 |
| KEGG | osa:4335338 dosa:Os04t0270100-01 |
| Entrez-Gene | 4335338 |