RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g20230.1 View Network Show in Genome Browser |
| Other Names | Os04g0270200 |
| Description | neighbor of COX4, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 11289843-11294189 Nucleotide Length: 630 |
| Protein-coding | LOC_Os04g20230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g21970 LOC_Os02g03470 LOC_Os02g02960 LOC_Os02g16640 LOC_Os03g05760 LOC_Os03g43890 LOC_Os01g15310 LOC_Os03g53190 LOC_Os03g13760 LOC_Os02g01250 LOC_Os02g10220 More.. |
| Downstream Genes | LOC_Os11g16320 LOC_Os04g36700 LOC_Os07g10830 LOC_Os07g29610 LOC_Os09g02284 LOC_Os08g09100 LOC_Os07g47420 LOC_Os05g46720 LOC_Os04g31320 LOC_Os12g15420 LOC_Os07g03070 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g20230.1 |
| Rice Genome Annotation | LOC_Os04g20230.1 |
| Ricechip | LOC_Os04g20230.1 |
| KEGG | osa:4335339 dosa:Os04t0270200-01 |
| Entrez-Gene | 4335339 |