RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g20270.2 View Network Show in Genome Browser |
| Other Names | Os04g0271000 |
| Description | transcriptional regulator Sir2 family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 11316226-11328592 Nucleotide Length: 1452 |
| Protein-coding | LOC_Os04g20270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11370 LOC_Os01g62650 LOC_Os01g70380 LOC_Os01g70370 LOC_Os01g53450 LOC_Os01g70360 LOC_Os01g60200 LOC_Os01g57210 LOC_Os01g54100 LOC_Os03g16369 LOC_Os02g01020 More.. |
| Downstream Genes | LOC_Os10g41150 LOC_Os11g31640 LOC_Os09g07360 LOC_Os05g50270 LOC_Os07g04550 LOC_Os07g13460 LOC_Os12g41800 LOC_Os07g41830 LOC_Os05g49280 LOC_Os04g41490 LOC_Os11g48090 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g20270.2 |
| Rice Genome Annotation | LOC_Os04g20270.2 |
| Ricechip | LOC_Os04g20270.2 |
| KEGG | osa:4335342 dosa:Os04t0271000-01 |
| Entrez-Gene | 4335342 |