RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g20590.1 View Network Show in Genome Browser |
| Other Names | Os04g0274400 |
| Description | YL1 nuclear protein C-terminal domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 11510705-11515835 Nucleotide Length: 375 |
| Protein-coding | LOC_Os04g20590 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22900 LOC_Os01g62040 LOC_Os04g09860 LOC_Os03g43590 LOC_Os03g10990 LOC_Os03g62110 LOC_Os03g57790 LOC_Os01g64490 LOC_Os02g37830 LOC_Os01g48210 |
| Downstream Genes | LOC_Os08g09320 LOC_Os06g08770 LOC_Os07g08170 LOC_Os12g41180 LOC_Os07g08000 LOC_Os09g39420 LOC_Os04g35060 LOC_Os04g46450 LOC_Os07g07240 LOC_Os05g08960 LOC_Os05g36960 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g20590.1 |
| Rice Genome Annotation | LOC_Os04g20590.1 |
| Ricechip | LOC_Os04g20590.1 |
| KEGG | osa:4335351 dosa:Os04t0274400-01 |
| Entrez-Gene | 4335351 |