RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g23180.1 View Network Show in Genome Browser |
| Other Names | Os04g0298200 |
| Description | cation efflux family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 13176740-13183064 Nucleotide Length: 1419 |
| Protein-coding | LOC_Os04g23180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22550 LOC_Os03g12530 LOC_Os02g58580 LOC_Os01g62070 LOC_Os01g03914 LOC_Os03g18870 LOC_Os02g45450 LOC_Os03g14400 LOC_Os02g07760 LOC_Os02g44654 |
| Downstream Genes | LOC_Os08g32650 LOC_Os05g03780 LOC_Os07g43390 LOC_Os05g51670 LOC_Os07g07470 LOC_Os08g32930 LOC_Os11g26850 LOC_Os09g36220 LOC_Os08g13890 LOC_Os04g40900 LOC_Os04g48350 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g23180.1 |
| Rice Genome Annotation | LOC_Os04g23180.1 |
| Ricechip | LOC_Os04g23180.1 |
| KEGG | dosa:Os04t0298200-01 |