RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g23580.1 View Network Show in Genome Browser |
| Other Names | Os04g0301700 |
| Description | xylosyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 13493211-13498065 Nucleotide Length: 1206 |
| Protein-coding | LOC_Os04g23580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g38050 LOC_Os02g06840 LOC_Os02g35870 LOC_Os01g65590 |
| Downstream Genes | LOC_Os06g46570 LOC_Os09g27950 LOC_Os05g35266 LOC_Os08g02370 LOC_Os08g29710 LOC_Os06g08005 LOC_Os06g07905 LOC_Os06g06280 LOC_Os05g11060 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g23580.1 |
| Rice Genome Annotation | LOC_Os04g23580.1 |
| Ricechip | LOC_Os04g23580.1 |
| KEGG | osa:4335418 dosa:Os04t0301700-01 |
| Entrez-Gene | 4335418 |