RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g23820.1 View Network Show in Genome Browser |
| Other Names | Os04g0303900 |
| Description | methionyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 13607957-13610433 Nucleotide Length: 780 |
| Protein-coding | LOC_Os04g23820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67134 LOC_Os02g14059 LOC_Os03g31090 LOC_Os01g59990 LOC_Os01g60790 LOC_Os01g54870 LOC_Os01g46070 LOC_Os03g58050 LOC_Os01g59730 LOC_Os03g19280 LOC_Os03g44484 More.. |
| Downstream Genes | LOC_Os12g02380 LOC_Os11g02450 LOC_Os07g05580 LOC_Os05g37330 LOC_Os09g24690 LOC_Os05g40820 LOC_Os08g33720 LOC_Os07g10660 LOC_Os07g47780 LOC_Os08g39500 LOC_Os08g02340 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 rn00450 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g23820.1 |
| Rice Genome Annotation | LOC_Os04g23820.1 |
| Ricechip | LOC_Os04g23820.1 |
| KEGG | osa:4335424 dosa:Os04t0303900-01 |
| Entrez-Gene | 4335424 |