RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g23910.1 View Network Show in Genome Browser |
| Other Names | Os04g0304400 |
| Description | OsMADS25 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 13672710-13675884 Nucleotide Length: 684 |
| Protein-coding | LOC_Os04g23910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54160 LOC_Os01g55040 LOC_Os03g54170 LOC_Os02g04490 LOC_Os01g22710 LOC_Os03g52320 LOC_Os03g03610 LOC_Os02g35010 LOC_Os02g55880 LOC_Os03g17700 LOC_Os02g38020 More.. |
| Downstream Genes | LOC_Os07g01820 LOC_Os11g10100 LOC_Os06g08380 LOC_Os11g40100 LOC_Os12g31350 LOC_Os07g41370 LOC_Os09g26180 LOC_Os08g41950 LOC_Os07g38950 LOC_Os06g27890 LOC_Os09g32948 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444a-3p.2 osa-miR444d.2 osa-miR444e |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g23910.1 |
| Rice Genome Annotation | LOC_Os04g23910.1 |
| Ricechip | LOC_Os04g23910.1 |
| KEGG | osa:4335427 dosa:Os04t0304400-01 |
| Entrez-Gene | 4335427 |