RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g24530.1 View Network Show in Genome Browser |
| Other Names | Os04g0310800 |
| Description | AMP-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 14072617-14074737 Nucleotide Length: 1668 |
| Protein-coding | LOC_Os04g24530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g07160 LOC_Os02g47970 LOC_Os01g59340 LOC_Os01g70090 LOC_Os01g21380 LOC_Os02g10310 |
| Downstream Genes | LOC_Os12g13320 LOC_Os12g07290 LOC_Os08g45180 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00071 rn01100 rn00130 rn00360 rn00940 rn01110 |
| Metacyc Pathways | PWY-5143 PWY-5136 FAO-PWY PWY1F-FLAVSYN PWY-361 PWY-5754 PWY-6435 PWY-6673 PWY-6320 PWY-1121 PWY-5135 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g24530.1 |
| Rice Genome Annotation | LOC_Os04g24530.1 |
| Ricechip | LOC_Os04g24530.1 |
| KEGG | dosa:Os04t0310800-01 |