RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g24600.1 View Network Show in Genome Browser |
| Other Names | Os04g0311400 |
| Description | cysteine proteinase 1 precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 14129614-14132611 Nucleotide Length: 1146 |
| Protein-coding | LOC_Os04g24600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g25440 LOC_Os03g52690 LOC_Os01g01340 LOC_Os03g31490 LOC_Os02g44870 LOC_Os03g41080 LOC_Os02g55610 LOC_Os03g17660 |
| Downstream Genes | LOC_Os06g30310 LOC_Os06g39590 LOC_Os08g38460 LOC_Os10g35670 LOC_Os05g49170 LOC_Os10g10500 LOC_Os10g31000 LOC_Os06g29180 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g24600.1 |
| Rice Genome Annotation | LOC_Os04g24600.1 |
| Ricechip | LOC_Os04g24600.1 |
| KEGG | osa:4335455 dosa:Os04t0311400-01 |
| Entrez-Gene | 4335455 |