RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g25410.1 View Network Show in Genome Browser |
| Other Names | Os04g0320200 |
| Description | pentatricopeptide repeat domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 14718532-14722122 Nucleotide Length: 1575 |
| Protein-coding | LOC_Os04g25410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g14950 LOC_Os03g41612 LOC_Os03g47990 LOC_Os02g14929 LOC_Os03g14580 LOC_Os01g53720 LOC_Os01g49290 |
| Downstream Genes | LOC_Os04g40990 LOC_Os09g25640 LOC_Os04g48060 LOC_Os05g34240 LOC_Os10g06610 LOC_Os12g03440 LOC_Os11g03670 LOC_Os07g46760 LOC_Os07g41260 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g25410.1 |
| Rice Genome Annotation | LOC_Os04g25410.1 |
| Ricechip | LOC_Os04g25410.1 |
| KEGG | osa:4335473 dosa:Os04t0320200-01 |
| Entrez-Gene | 4335473 |