RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g25540.1 View Network Show in Genome Browser |
| Other Names | Os04g0321500 |
| Description | ribosomal protein L27, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 14804703-14805724 Nucleotide Length: 438 |
| Protein-coding | LOC_Os04g25540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g15900 LOC_Os03g58540 LOC_Os03g03360 LOC_Os01g55890 LOC_Os01g62210 LOC_Os02g24612 LOC_Os01g14830 LOC_Os03g56800 LOC_Os01g54540 LOC_Os01g50050 LOC_Os03g25450 More.. |
| Downstream Genes | LOC_Os05g48410 LOC_Os07g43470 LOC_Os11g47800 LOC_Os08g06230 LOC_Os07g47300 LOC_Os05g28940 LOC_Os05g50550 LOC_Os12g17320 LOC_Os06g46450 LOC_Os08g09370 LOC_Os06g19640 More.. |
| Reference | |
|---|---|
| PubMed | 20080642 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g25540.1 |
| Rice Genome Annotation | LOC_Os04g25540.1 |
| Ricechip | LOC_Os04g25540.1 |
| KEGG | dosa:Os04t0321500-00 |