RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g27830.1 View Network Show in Genome Browser |
| Other Names | Os04g0345800 |
| Description | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 16442096-16446125 Nucleotide Length: 855 |
| Protein-coding | LOC_Os04g27830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g01120 |
| Downstream Genes | LOC_Os11g29370 LOC_Os06g21600 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 |
| Metacyc Pathways | PWY-4361 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g27830.1 |
| Rice Genome Annotation | LOC_Os04g27830.1 |
| Ricechip | LOC_Os04g27830.1 |
| KEGG | dosa:Os04t0345800-00 |