RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g28090.1 View Network Show in Genome Browser
Other Names	Os04g0348300
Description	MYB family transcription factor, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 16579869-16587180 Nucleotide Length: 2919
Protein-coding	LOC_Os04g28090

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g21990 LOC_Os02g39050 LOC_Os02g52250 LOC_Os02g04480 LOC_Os02g01740 LOC_Os02g19860 LOC_Os02g55410 LOC_Os02g05310 LOC_Os02g13990 LOC_Os01g63890 LOC_Os01g36390 More..
Downstream Genes	LOC_Os05g22260 LOC_Os07g44970 LOC_Os06g33250 LOC_Os05g07050 LOC_Os05g39850 LOC_Os06g12910 LOC_Os12g42140 LOC_Os08g03390 LOC_Os05g37390 LOC_Os12g15420 LOC_Os06g08790 More..

miRNA Regulations
miRNAs	osa-miR1435

Database Links
Gramene	LOC_Os04g28090.1
Rice Genome Annotation	LOC_Os04g28090.1
Ricechip	LOC_Os04g28090.1
KEGG	osa:4335542 dosa:Os04t0348300-01
Entrez-Gene	4335542