RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g31190.1 View Network Show in Genome Browser |
| Other Names | Os04g0381000 |
| Description | dynamin family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 18659440-18669921 Nucleotide Length: 2394 |
| Protein-coding | LOC_Os04g31190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g06500 LOC_Os01g54100 LOC_Os01g72280 LOC_Os03g60180 LOC_Os03g24060 LOC_Os02g06340 LOC_Os03g13860 LOC_Os02g14130 LOC_Os01g55740 LOC_Os03g46330 LOC_Os01g10840 More.. |
| Downstream Genes | LOC_Os05g31770 LOC_Os11g38020 LOC_Os10g04580 LOC_Os06g47330 LOC_Os04g57350 LOC_Os10g35690 LOC_Os04g51950 LOC_Os07g40790 LOC_Os06g35530 LOC_Os08g12750 LOC_Os05g11730 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g31190.1 |
| Rice Genome Annotation | LOC_Os04g31190.1 |
| Ricechip | LOC_Os04g31190.1 |
| KEGG | osa:4335633 dosa:Os04t0381000-01 |
| Entrez-Gene | 4335633 |