RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g31270.1 View Network Show in Genome Browser |
| Other Names | Os04g0381600 |
| Description | EMB1688, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 18702706-18707727 Nucleotide Length: 1101 |
| Protein-coding | LOC_Os04g31270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g23830 LOC_Os02g26660 LOC_Os01g54350 LOC_Os03g01216 LOC_Os02g05820 LOC_Os02g06570 LOC_Os02g08240 LOC_Os02g54590 LOC_Os01g01740 LOC_Os02g56370 LOC_Os02g06930 More.. |
| Downstream Genes | LOC_Os11g35274 LOC_Os06g43030 LOC_Os10g17960 LOC_Os12g38860 LOC_Os06g03610 LOC_Os08g07890 LOC_Os09g38850 LOC_Os09g32810 LOC_Os08g40170 LOC_Os04g35114 LOC_Os05g06990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g31270.1 |
| Rice Genome Annotation | LOC_Os04g31270.1 |
| Ricechip | LOC_Os04g31270.1 |
| KEGG | osa:4335637 dosa:Os04t0381600-00 |
| Entrez-Gene | 4335637 |