RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g31390.1 View Network Show in Genome Browser |
| Other Names | Os04g0382700 |
| Description | vacuolar protein sorting-associated protein 11, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 18770713-18776160 Nucleotide Length: 2844 |
| Protein-coding | LOC_Os04g31390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47650 LOC_Os04g14654 LOC_Os04g11880 LOC_Os01g74460 LOC_Os01g12730 LOC_Os02g24134 LOC_Os02g02720 LOC_Os01g73230 LOC_Os01g51120 LOC_Os01g37980 LOC_Os02g47440 More.. |
| Downstream Genes | LOC_Os08g08060 LOC_Os12g01390 LOC_Os11g01380 LOC_Os04g36810 LOC_Os08g17600 LOC_Os10g22570 LOC_Os05g44050 LOC_Os07g07000 LOC_Os11g06740 LOC_Os06g07200 LOC_Os09g07830 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396e-3p osa-miR5542 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g31390.1 |
| Rice Genome Annotation | LOC_Os04g31390.1 |
| Ricechip | LOC_Os04g31390.1 |
| KEGG | osa:4335642 dosa:Os04t0382700-01 |
| Entrez-Gene | 4335642 |