RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g31900.1 View Network Show in Genome Browser |
| Other Names | Os04g0388500 |
| Description | calmodulin-binding transcription activator 4, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19105902-19113570 Nucleotide Length: 3012 |
| Protein-coding | LOC_Os04g31900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g57330 LOC_Os03g04210 LOC_Os02g19640 |
| Downstream Genes | LOC_Os10g28420 LOC_Os08g02250 LOC_Os05g03190 LOC_Os04g48160 LOC_Os04g56740 LOC_Os04g34450 LOC_Os10g42650 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g31900.1 |
| Rice Genome Annotation | LOC_Os04g31900.1 |
| Ricechip | LOC_Os04g31900.1 |
| KEGG | osa:4335664 dosa:Os04t0388500-01 |
| Entrez-Gene | 4335664 |