RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g31960.1 View Network Show in Genome Browser |
| Other Names | Os04g0389100 |
| Description | thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19142083-19144072 Nucleotide Length: 1863 |
| Protein-coding | LOC_Os04g31960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39570 LOC_Os01g46380 LOC_Os02g05780 LOC_Os03g12890 LOC_Os03g50510 LOC_Os03g18220 LOC_Os01g32080 LOC_Os03g24460 LOC_Os03g01600 LOC_Os02g03260 LOC_Os03g59570 More.. |
| Downstream Genes | LOC_Os05g49800 LOC_Os11g14950 LOC_Os08g44530 LOC_Os10g30970 LOC_Os12g04440 LOC_Os11g04670 LOC_Os11g41160 LOC_Os12g31820 LOC_Os05g24660 LOC_Os05g48450 LOC_Os05g39310 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00290 rn00660 rn01100 rn01110 rn01210 |
| Metacyc Pathways | ILEUSYN-PWY VALSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g31960.1 |
| Rice Genome Annotation | LOC_Os04g31960.1 |
| Ricechip | LOC_Os04g31960.1 |
| KEGG | dosa:Os04t0389100-00 |