RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32020.1 View Network Show in Genome Browser |
| Other Names | Os04g0390000 |
| Description | 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19175703-19179290 Nucleotide Length: 2715 |
| Protein-coding | LOC_Os04g32020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g31040 LOC_Os01g22520 LOC_Os02g40830 LOC_Os01g23610 LOC_Os01g19450 LOC_Os02g50620 LOC_Os02g37862 LOC_Os02g13840 LOC_Os02g01500 LOC_Os03g50540 LOC_Os04g19740 More.. |
| Downstream Genes | LOC_Os04g32330 LOC_Os05g06750 LOC_Os07g04240 LOC_Os08g02640 LOC_Os09g20440 LOC_Os07g38970 LOC_Os11g47330 LOC_Os11g47120 LOC_Os05g06460 LOC_Os04g39700 LOC_Os12g37870 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00310 rn01100 rn00020 rn01120 rn00380 |
| Metacyc Pathways | PWY-5084 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32020.1 |
| Rice Genome Annotation | LOC_Os04g32020.1 |
| Ricechip | LOC_Os04g32020.1 |
| KEGG | osa:4335673 dosa:Os04t0390000-01 |
| Entrez-Gene | 4335673 |