RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32080.1 View Network Show in Genome Browser |
| Other Names | Os04g0390800 |
| Description | 11-beta-hydroxysteroid dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19236670-19238881 Nucleotide Length: 774 |
| Protein-coding | LOC_Os04g32080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21790 LOC_Os03g31360 LOC_Os01g55690 LOC_Os02g25640 LOC_Os01g05840 LOC_Os02g39490 LOC_Os01g70430 LOC_Os03g46100 LOC_Os04g30760 LOC_Os03g40440 LOC_Os02g30060 More.. |
| Downstream Genes | LOC_Os07g11380 LOC_Os07g11360 LOC_Os04g43170 LOC_Os07g10580 LOC_Os07g10570 LOC_Os11g07930 LOC_Os07g12080 LOC_Os05g26400 LOC_Os05g26386 LOC_Os05g26377 LOC_Os05g26368 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 |
| Metacyc Pathways | PWY-5079 PWY-5057 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5082 PWY-5076 PWY-5078 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32080.1 |
| Rice Genome Annotation | LOC_Os04g32080.1 |
| Ricechip | LOC_Os04g32080.1 |
| KEGG | osa:4335679 dosa:Os04t0390800-01 |
| Entrez-Gene | 4335679 |