RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32320.1 View Network Show in Genome Browser |
| Other Names | Os04g0394100 |
| Description | glycerophosphoryl diester phosphodiesterase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19373689-19376928 Nucleotide Length: 1191 |
| Protein-coding | LOC_Os04g32320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18010 LOC_Os03g61200 LOC_Os02g10780 LOC_Os02g03890 |
| Downstream Genes | LOC_Os12g37560 LOC_Os07g49330 LOC_Os05g45890 LOC_Os06g40120 LOC_Os05g03610 LOC_Os06g29790 LOC_Os10g41960 LOC_Os11g34860 LOC_Os06g43680 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY0-381 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32320.1 |
| Rice Genome Annotation | LOC_Os04g32320.1 |
| Ricechip | LOC_Os04g32320.1 |
| KEGG | osa:4335688 dosa:Os04t0394100-00 |
| Entrez-Gene | 4335688 |