RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32650.1 View Network Show in Genome Browser |
| Other Names | Os04g0398300 |
| Description | tRNA synthetase class II core domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19677039-19682186 Nucleotide Length: 2022 |
| Protein-coding | LOC_Os04g32650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22740 LOC_Os03g10190 LOC_Os01g37837 LOC_Os03g22730 LOC_Os02g55060 LOC_Os02g58020 LOC_Os02g32490 LOC_Os02g07870 LOC_Os03g60400 LOC_Os01g61814 LOC_Os01g63830 More.. |
| Downstream Genes | LOC_Os12g25710 LOC_Os05g05840 LOC_Os08g19850 LOC_Os11g39670 LOC_Os06g43760 LOC_Os06g45120 LOC_Os10g10244 LOC_Os09g07830 LOC_Os05g46580 LOC_Os12g03720 LOC_Os11g03900 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32650.1 |
| Rice Genome Annotation | LOC_Os04g32650.1 |
| Ricechip | LOC_Os04g32650.1 |
| KEGG | osa:4335708 dosa:Os04t0398300-01 |
| Entrez-Gene | 4335708 |