RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32710.1 View Network Show in Genome Browser |
| Other Names | Os04g0399000 |
| Description | 40S ribosomal protein S27, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19712823-19714034 Nucleotide Length: 138 |
| Protein-coding | LOC_Os04g32710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21940 LOC_Os02g02130 LOC_Os03g38260 LOC_Os03g04590 LOC_Os02g56960 LOC_Os02g56990 LOC_Os03g27260 LOC_Os02g47140 LOC_Os01g48770 LOC_Os01g04730 LOC_Os02g40880 More.. |
| Downstream Genes | LOC_Os07g33997 LOC_Os07g33921 LOC_Os07g33898 LOC_Os07g26740 LOC_Os07g33860 LOC_Os08g03450 LOC_Os08g02340 LOC_Os07g42950 LOC_Os10g32920 LOC_Os04g42270 LOC_Os04g50990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32710.1 |
| Rice Genome Annotation | LOC_Os04g32710.1 |
| Ricechip | LOC_Os04g32710.1 |
| KEGG | dosa:Os04t0399000-00 |