RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32880.3 View Network Show in Genome Browser |
| Other Names | Os04g0401300 |
| Description | CBS domain containing membrane protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19851376-19859052 Nucleotide Length: 1218 |
| Protein-coding | LOC_Os04g32880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g20340 LOC_Os03g17980 LOC_Os03g56800 LOC_Os01g65500 LOC_Os03g47120 LOC_Os02g35190 LOC_Os03g03430 LOC_Os02g12900 LOC_Os03g53650 LOC_Os01g74650 LOC_Os04g08350 More.. |
| Downstream Genes | LOC_Os05g41220 LOC_Os05g45420 LOC_Os07g48790 LOC_Os08g37800 LOC_Os08g20570 LOC_Os04g55210 LOC_Os06g36840 LOC_Os06g36880 LOC_Os06g05700 LOC_Os06g05690 LOC_Os12g42980 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5486 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32880.3 |
| Rice Genome Annotation | LOC_Os04g32880.3 |
| Ricechip | LOC_Os04g32880.3 |
| KEGG | osa:4335727 dosa:Os04t0401300-01 |
| Entrez-Gene | 4335727 |