RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32930.1 View Network Show in Genome Browser |
| Other Names | Os04g0401800 |
| Description | DNA cross-link repair 1A protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19893384-19896711 Nucleotide Length: 1446 |
| Protein-coding | LOC_Os04g32930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g48930 LOC_Os02g53060 LOC_Os03g58010 LOC_Os02g08520 LOC_Os01g12670 LOC_Os01g66270 |
| Downstream Genes | LOC_Os04g46670 LOC_Os06g04800 LOC_Os06g43570 LOC_Os05g09490 LOC_Os06g06030 LOC_Os09g32800 LOC_Os08g41730 LOC_Os09g37080 LOC_Os05g03430 LOC_Os09g33986 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32930.1 |
| Rice Genome Annotation | LOC_Os04g32930.1 |
| Ricechip | LOC_Os04g32930.1 |
| KEGG | osa:4335730 dosa:Os04t0401800-01 |
| Entrez-Gene | 4335730 |